API for sunlightwang/SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
| Global functions | |
|---|---|
| DENBStat4GSEA | Man page Source code |
| DENBStatPermut4GSEA | Man page Source code |
| DENBTest | Man page |
| DEpermutePval | Man page Source code |
| DEscore | Man page |
| DEscore.perm | Man page |
| DSpermute4GSEA | Man page Source code |
| DSpermutePval | Man page Source code |
| DSresultExonTable | Man page Source code |
| DSresultGeneTable | Man page Source code |
| DSscore | Man page |
| DSscore.perm | Man page |
| GSEAresultTable | Man page Source code |
| GSEnrichAnalyze | Man page Source code |
| GS_example | Man page |
| RCS_example | Man page |
| ReadCountSet | Man page |
| ReadCountSet-class | Man page |
| SeqGSEA | Man page |
| SeqGSEA-package | Man page |
| SeqGeneSet | Man page |
| SeqGeneSet-class | Man page |
| [,SeqGeneSet,numeric,ANY,ANY-method | Man page |
| [,SeqGeneSet,numeric-method | Man page |
| `exonID<-` | Source code |
| `geneID<-` | Source code |
| calES | Man page Source code |
| calES.perm | Man page Source code |
| calVar | Source code |
| convertEnsembl2Symbol | Man page Source code |
| convertSymbol2Ensembl | Man page Source code |
| counts | Man page |
| counts,ReadCountSet-method | Man page |
| counts-methods | Man page |
| counts<-,ReadCountSet,matrix-method | Man page |
| dphifun | Source code |
| estiExonNBstat | Man page Source code |
| estiExonProbVar | Source code |
| estiGeneNBstat | Man page Source code |
| estiPhi | Source code |
| exonID | Man page Source code |
| exonID<- | Man page |
| exonTestability | Man page Source code |
| geneID | Man page Source code |
| geneID<- | Man page |
| geneList | Man page Source code |
| genePermuteScore | Man page |
| geneScore | Man page |
| geneSetDescs | Man page Source code |
| geneSetNames | Man page Source code |
| geneSetSize | Man page Source code |
| geneTestability | Man page Source code |
| genpermuteMat | Man page Source code |
| getGeneCount | Man page Source code |
| label | Man page Source code |
| loadExonCountData | Man page Source code |
| loadGenesets | Man page Source code |
| newGeneSets | Man page Source code |
| newReadCountSet | Man page Source code |
| normES | Man page Source code |
| normFactor | Man page Source code |
| phifun | Source code |
| plotES | Man page Source code |
| plotGeneScore | Man page Source code |
| plotSig | Man page Source code |
| plotSigGeneSet | Man page Source code |
| rankCombine | Man page Source code |
| runDESeq | Man page Source code |
| runSeqGSEA | Man page Source code |
| scoreNormalization | Man page Source code |
| show,SeqGeneSet-method | Man page |
| signifES | Man page Source code |
| size | Man page Source code |
| sizeOfExcludedGS | Source code |
| subsetByGenes | Man page Source code |
| topDEGenes | Man page Source code |
| topDSExons | Man page Source code |
| topDSGenes | Man page Source code |
| topGeneSets | Man page Source code |
| writeScores | Man page Source code |
| writeSigGeneSet | Man page Source code |
