geneTestability: Check gene testability

In sunlightwang/SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

Description

This function is to determine each gene's testability. A gene is testable if at least one of its exons are testable.

Usage

geneTestability(RCS)

Arguments

RCS	a ReadCountSet object after exon testability checked, usually the output of exonTestability.

Details

This result can applied to filter out genes not expressed.

Value

A logical vector indicating which genes are testable, i.e., having at least one exon testable.

Note

Please run exonTestability before run this function.

Author(s)

Xi Wang, [e-mail]

See Also

exonTestability, subsetByGenes

Examples

data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
geneTestable <- geneTestability(RCS_example)
head(geneTestable)

sunlightwang/SeqGSEA documentation built on Dec. 5, 2020, 5:52 p.m.