Files in sunlightwang/SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
DESCRIPTION
NAMESPACE
NEWS
R/Allclasses.R
R/DEscore.R
R/DSscore.R
R/SeqGSEA.R
R/estiNB.R
R/plots.R
data/DEscore.RData
data/DEscore.perm.RData
data/DSscore.RData
data/DSscore.perm.RData
data/GS_example.RData
data/RCS_example.RData
inst/CITATION
inst/extdata/SC02.exonCnt.txt
inst/extdata/SC03.exonCnt.txt
inst/extdata/SC06.exonCnt.txt
inst/extdata/SC08.exonCnt.txt
inst/extdata/SC09.exonCnt.txt
inst/extdata/SC11.exonCnt.txt
inst/extdata/SC13.exonCnt.txt
inst/extdata/SC15.exonCnt.txt
inst/extdata/SC19.exonCnt.txt
inst/extdata/SC23.exonCnt.txt
inst/extdata/SN02.exonCnt.txt
inst/extdata/SN03.exonCnt.txt
inst/extdata/SN06.exonCnt.txt
inst/extdata/SN08.exonCnt.txt
inst/extdata/SN09.exonCnt.txt
inst/extdata/SN11.exonCnt.txt
inst/extdata/SN13.exonCnt.txt
inst/extdata/SN15.exonCnt.txt
inst/extdata/SN19.exonCnt.txt
inst/extdata/SN23.exonCnt.txt
inst/extdata/geneCounts.txt
inst/extdata/gs_symb.txt
inst/extscripts/count_in_exons.py
inst/extscripts/prepare_exon_annotation_ensembl.py
inst/extscripts/prepare_exon_annotation_refseq.py
man/DENBStat4GSEA.Rd
man/DENBStatPermut4GSEA.Rd
man/DENBTest.Rd
man/DEpermutePval.Rd
man/DEscore.Rd
man/DSpermute4GSEA.Rd
man/DSpermutePval.Rd
man/DSresultExonTable.Rd
man/DSresultGeneTable.Rd
man/GSEAresultTable.Rd
man/GSEnrichAnalyze.Rd
man/GS_example.Rd
man/RCS_example.Rd
man/ReadCountSet-class.Rd
man/SeqGSEA-package.Rd
man/SeqGeneSet-class.Rd
man/calES.Rd
man/calES.perm.Rd
man/convertEnsembl2Symbol.Rd
man/convertSymbol2Ensembl.Rd
man/counts-methods.Rd
man/estiExonNBstat.Rd
man/estiGeneNBstat.Rd
man/exonID.Rd
man/exonTestability.Rd
man/geneID.Rd
man/geneList.Rd
man/genePermuteScore.Rd
man/geneScore.Rd
man/geneSetDescs.Rd
man/geneSetNames.Rd
man/geneSetSize.Rd
man/geneTestability.Rd
man/genpermuteMat.Rd
man/getGeneCount.Rd
man/label.Rd
man/loadExonCountData.Rd
man/loadGenesets.Rd
man/newGeneSets.Rd
man/newReadCountSet.Rd
man/normES.Rd
man/normFactor.Rd
man/plotES.Rd
man/plotGeneScore.Rd
man/plotSig.Rd
man/plotSigGeneSet.Rd
man/rankCombine.Rd
man/runDESeq.Rd
man/runSeqGSEA.Rd
man/scoreNormalization.Rd
man/signifES.Rd
man/size.Rd
man/subsetByGenes.Rd
man/topDEGenes.Rd
man/topDSExons.Rd
man/topDSGenes.Rd
man/topGeneSets.Rd
man/writeScores.Rd
man/writeSigGeneSet.Rd
vignettes/SeqGSEA.Rnw
vignettes/SeqGSEA.bib
