prepare_features_components: Prepare features components

In taxonomicallyinformedannotation/tima-r: Taxonomically Informed Metabolite Annotation

Prepare features components

Description

This function prepares the components (clusters in molecular network) for further use

Usage

prepare_features_components(
  input = get_params(step =
    "prepare_features_components")$files$networks$spectral$components$raw,
  output = get_params(step =
    "prepare_features_components")$files$networks$spectral$components$prepared
)

Arguments

input	Input file
output	Output file

Value

The path to the prepared features' components

Examples

## Not run: 
tima:::copy_backbone()
go_to_cache()
github <- "https://raw.githubusercontent.com/"
repo <- "taxonomicallyinformedannotation/tima-example-files/main/"
dir <- paste0(github, repo)
input <- get_params(step = "prepare_features_components")$files$networks$spectral$components$raw
get_file(url = paste0(dir, input), export = input)
prepare_features_components(
  input = input
)
unlink("data", recursive = TRUE)

## End(Not run)

taxonomicallyinformedannotation/tima-r documentation built on Dec. 20, 2024, 9:32 a.m.