prepare_features_edges: Prepare features edges

In taxonomicallyinformedannotation/tima-r: Taxonomically Informed Metabolite Annotation

Prepare features edges

Description

This function prepares edges for further use

Usage

prepare_features_edges(
  input = get_params(step = "prepare_features_edges")$files$networks$spectral$edges$raw,
  output = get_params(step =
    "prepare_features_edges")$files$networks$spectral$edges$prepared,
  name_source = get_params(step = "prepare_features_edges")$names$source,
  name_target = get_params(step = "prepare_features_edges")$names$target
)

Arguments

input	Input file if 'manual'
output	Output file
name_source	Name of the source features column
name_target	Name of the target features column

Value

The path to the prepared edges

Examples

## Not run: 
tima:::copy_backbone()
go_to_cache()
github <- "https://raw.githubusercontent.com/"
repo <- "taxonomicallyinformedannotation/tima-example-files/main/"
dir <- paste0(github, repo)
input_1 <- get_params(step = "prepare_features_edges")$files$networks$spectral$edges$raw$ms1
input_2 <- get_params(step = "prepare_features_edges")$files$networks$spectral$edges$raw$spectral
get_file(url = paste0(dir, input_1), export = input_1)
get_file(url = paste0(dir, input_2), export = input_2)
prepare_features_edges(
  input = list("ms1" = input_1, "spectral" = input_2)
)
unlink("data", recursive = TRUE)

## End(Not run)

taxonomicallyinformedannotation/tima-r documentation built on Nov. 20, 2024, 4:34 a.m.