prepare_libraries_sop_hmdb: Prepare libraries of structure organism pairs HMDB

In taxonomicallyinformedannotation/tima-r: Taxonomically Informed Metabolite Annotation

Prepare libraries of structure organism pairs HMDB

Description

This function prepares the HMDB structure-organism pairs

Usage

prepare_libraries_sop_hmdb(
  input = get_params(step = "prepare_libraries_sop_hmdb")$files$libraries$sop$raw$hmdb,
  output = get_params(step =
    "prepare_libraries_sop_hmdb")$files$libraries$sop$prepared$hmdb
)

Arguments

input	Input file
output	Output file

Value

The path to the prepared structure-organism pairs library HMDB

Examples

## Not run: 
tima:::copy_backbone()
go_to_cache()
prepare_libraries_sop_hmdb()
unlink("data", recursive = TRUE)

## End(Not run)

taxonomicallyinformedannotation/tima-r documentation built on Dec. 20, 2024, 9:32 a.m.