Files in taylo5jm/interactions
Classification of gene expression profile sets generated from combination stimuli
DESCRIPTION
NAMESPACE
R/Interaction.R
R/barplots.R
R/caret_knn.R
R/classification.R
R/dated_tools.R
R/dge2voom_q.R
R/edgeR_generics.R
R/figure/unnamed-chunk-3-1.png
R/interaction_tools.R
R/limma_generics.R
R/metadata_tools.R
R/multiplot.R
R/outcome_vector_tools.R
R/pca_scatter_matrix.R
R/sitt.R
R/top_go.R
README.Rmd
build/vignette.rds
contributors.txt
inst/.DS_Store
inst/._.DS_Store
inst/doc/sitt.R
inst/doc/sitt.Rmd
inst/doc/sitt.html
man/.DS_Store
man/._.DS_Store
man/Interaction-class.Rd
man/allDrugCombinations.Rd
man/allModes.Rd
man/asCountsMatrix.Rd
man/classifyByThOutcomeVector.Rd
man/codeEdgeROutcomeVectors.Rd
man/codeLimmaOutcomeVectors.Rd
man/codeOVElement.Rd
man/colorBarplot.Rd
man/comboExists.Rd
man/comboIndices.Rd
man/designColnames.Rd
man/designMatrixAndContrasts.Rd
man/dge2voom_q.Rd
man/edgeRModeClassifier.Rd
man/enumerateThOutcomeVectors.Rd
man/estimateAllGLMDisp.Rd
man/filterMetadata.Rd
man/getCondition.Rd
man/getExpectedCounts.Rd
man/getGOTable.Rd
man/getGOTermsForAllModes.Rd
man/getGOTermsForModes.Rd
man/getGeneMetadata.Rd
man/getGeneVector.Rd
man/getIntClass.Rd
man/getInteraction.Rd
man/getPCAScores.Rd
man/getVehicles.Rd
man/glmFitAndLRT.Rd
man/initInteraction.Rd
man/interactionDistTable.Rd
man/interactionGeneTable.Rd
man/interactionModeClassifier.Rd
man/interactions-package.Rd
man/isAnomaly.Rd
man/isMode.Rd
man/isNi.Rd
man/isValidCombination.Rd
man/limmaModeClassifier.Rd
man/massageCounts.Rd
man/modeClassification.Rd
man/multiplot.Rd
man/niCheck.Rd
man/outcomeVectorsByMode.Rd
man/ovTable.Rd
man/partitionData.Rd
man/pcaScatterMatrix.Rd
man/poolInteractionGenes.Rd
man/qplotOutcomeVectorDist.Rd
man/rankTuples.Rd
man/reportModeClassStats.Rd
man/reportnAnomaly.Rd
man/reportnInteractions.Rd
man/reportnNI.Rd
man/saveTopGoRes.Rd
man/sharedGenesTable.Rd
man/sitt-package.Rd
man/stringCoerce.Rd
man/trainKNN.Rd
man/treatmentConcTable.Rd
man/tuneClassifier.Rd
man/uniqueBatches.Rd
vignettes/README.Rmd
vignettes/anomaly_classification.Rmd
vignettes/anomaly_classification.md
vignettes/enumerate_outcome_vectors.Rmd
vignettes/enumerate_outcome_vectors.md
vignettes/interactions_brief.Rmd
vignettes/mode_classification_implementation.Rmd
vignettes/mode_classification_implementation.md
vignettes/mode_plots.Rmd
vignettes/nomenclature_ref.Rmd
vignettes/nomenclature_ref.md
vignettes/references.Rmd
vignettes/sample_interaction_report.Rmd
vignettes/sample_interaction_report.md
vignettes/sample_workflow.Rmd
vignettes/sample_workflow.md
vignettes/sitagliptin_metformin_workflow.Rmd
vignettes/sitagliptin_metformin_workflow.md
vignettes/sitt.Rmd
vignettes/sitt.md
vignettes/workflows.Rmd
vignettes/workflows.md
