Interaction-class: Interaction class to hold results from mode classification...

In taylo5jm/interactions: Classification of gene expression profile sets generated from combination stimuli

Description

Interaction class to hold results from mode classification with the edgeR limma pipelines

Slots

interaction.tbl:

Data.frame containing mode classification and other data from edgeR or limma

modes:

Factor vector of length n where each element is an interaction mode classification that can mapped to a gene.

outcome.vectors:

Matrix of dimensions i x 6 where each row represents a 6-dimensional outcome vector corresponding to the possible comparisons when gene expression outputs from 4 conditions are compared

outcome.vectors.s:

Character vector of length n where each element is an outcome vector as a string

voom:

EList object

d:

DGEList object

design:

list with design matrix and contrasts from makeContrasts()

taylo5jm/interactions documentation built on May 31, 2019, 3:57 a.m.