designMatrixAndContrasts: make design matrix and contrasts based on whether...
In taylo5jm/interactions: Classification of gene expression profile sets generated from combination stimuli
Description
Usage
Arguments
Value
Description
make design matrix and contrasts based on whether signal_combination is 2 drugs or M/F/Dug
Usage
1
designMatrixAndContrasts(metadata, pipeline, DRUG_COMBINATION = TRUE)
Arguments
metadata
data.frame with metadata retrieved for 4 conditions
pipeline
character vector of length 1 indicating what pipeline is
being used to classify interaction modes for each gene
drug_combination
Boolean TRUE when signal x, signal y, and signal x + y
are conditions 2, 3, and 4 respectively
Value
list where list[[1]] is the design matrix and list[[2]]
represent the contrasts created with limma::make.contrasts if pipeline == "edgeR"
if pipeline == "limma", then a design matrix is returned.
taylo5jm/interactions documentation built on May 31, 2019, 3:57 a.m.
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Description Usage Arguments Value
Description
make design matrix and contrasts based on whether signal_combination is 2 drugs or M/F/Dug
Usage
1 | designMatrixAndContrasts(metadata, pipeline, DRUG_COMBINATION = TRUE)
|
Arguments
metadata |
data.frame with metadata retrieved for 4 conditions |
pipeline |
character vector of length 1 indicating what pipeline is being used to classify interaction modes for each gene |
drug_combination |
Boolean TRUE when signal x, signal y, and signal x + y are conditions 2, 3, and 4 respectively |
Value
list where list[[1]] is the design matrix and list[[2]] represent the contrasts created with limma::make.contrasts if pipeline == "edgeR" if pipeline == "limma", then a design matrix is returned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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