getGOTermsForModes: get topGO tables and significant genes for a particular...
In taylo5jm/interactions: Classification of gene expression profile sets generated from combination stimuli
Description
Usage
Arguments
Value
Examples
Description
get topGO tables and significant genes for a particular ontology with gene
vectors for every interaction mode present in the interaction table
Usage
1
getGOTermsForModes(data, interaction.tbl, ontology)
Arguments
interaction.tbl
interaction data.frame generated from
interaction mode classification
ontology
character vector of length 1 indicating ontology ("MF", "CC", "BP")
v
Elist constructed with dge2voom_q()
Value
list where first element is a topGO table and the second element is a
character vector of significant genes
Examples
1
2
3
4
5
6
## Not run:
v <- dge2voom_q(counts, genes)
interactionModeClassification()
mf_terms <- getGOTermsForModes(v, edgeR_interaction.tbl, ontology = "MF")
## End(Not run)
taylo5jm/interactions documentation built on May 31, 2019, 3:57 a.m.
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Description Usage Arguments Value Examples
Description
get topGO tables and significant genes for a particular ontology with gene vectors for every interaction mode present in the interaction table
Usage
1 | getGOTermsForModes(data, interaction.tbl, ontology)
|
Arguments
interaction.tbl |
interaction data.frame generated from interaction mode classification |
ontology |
character vector of length 1 indicating ontology ("MF", "CC", "BP") |
v |
Elist constructed with dge2voom_q() |
Value
list where first element is a topGO table and the second element is a character vector of significant genes
Examples
1 2 3 4 5 6 | ## Not run:
v <- dge2voom_q(counts, genes)
interactionModeClassification()
mf_terms <- getGOTermsForModes(v, edgeR_interaction.tbl, ontology = "MF")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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