getExpectedCounts: Get matrix of expected counts from rnaseq_assay_id
In taylo5jm/interactions: Classification of gene expression profile sets generated from combination stimuli
Description
Usage
Arguments
Value
Description
Get matrix of expected counts from rnaseq_assay_id
Usage
1
getExpectedCounts(CON, metadata, level = "gene")
Arguments
CON
MySQLConnection object (should be connected to database with
table "gene_rsem_count" containing field "rnaseq_assay_id")
metadata
data.frame where rows are libraries and columns are
variables associated with libraries
level
character vector of length n = 1 indicating if "gene" or
"isoform" expected counts should be used. NOTE: ONLY SUPPORTS "gene" argument
for now
Value
matrix where each row is a gene and each column is a library
taylo5jm/interactions documentation built on May 31, 2019, 3:57 a.m.
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Description Usage Arguments Value
Description
Get matrix of expected counts from rnaseq_assay_id
Usage
1 | getExpectedCounts(CON, metadata, level = "gene")
|
Arguments
CON |
MySQLConnection object (should be connected to database with table "gene_rsem_count" containing field "rnaseq_assay_id") |
metadata |
data.frame where rows are libraries and columns are variables associated with libraries |
level |
character vector of length n = 1 indicating if "gene" or "isoform" expected counts should be used. NOTE: ONLY SUPPORTS "gene" argument for now |
Value
matrix where each row is a gene and each column is a library
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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