getGOTermsForAllModes: get GO tables for all ontologies, given an interaction table...
In taylo5jm/interactions: Classification of gene expression profile sets generated from combination stimuli
Description
Usage
Arguments
Value
Examples
Description
get GO tables for all ontologies, given an interaction table data.frame constructed
from geneInteractionTable()
Usage
1
getGOTermsForAllModes(data, interaction.tbl)
Arguments
interaction.tbl
data.frame constructed with geneInteractionTable()
v
EList constructed with voom()
Value
nested list where each element is a list containing GO tables
and significant genesgenerated with topGO using each mode as a gene vector
Examples
1
2
3
4
5
6
## Not run:
v <- dge2voom_q(counts, genes)
interactionModeClassification()
all_go_terms <- getGOTermsForModesAll(v, edgeR_interaction.tbl)
## End(Not run)
taylo5jm/interactions documentation built on May 31, 2019, 3:57 a.m.
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Description Usage Arguments Value Examples
Description
get GO tables for all ontologies, given an interaction table data.frame constructed from geneInteractionTable()
Usage
1 | getGOTermsForAllModes(data, interaction.tbl)
|
Arguments
interaction.tbl |
data.frame constructed with geneInteractionTable() |
v |
EList constructed with voom() |
Value
nested list where each element is a list containing GO tables and significant genesgenerated with topGO using each mode as a gene vector
Examples
1 2 3 4 5 6 | ## Not run:
v <- dge2voom_q(counts, genes)
interactionModeClassification()
all_go_terms <- getGOTermsForModesAll(v, edgeR_interaction.tbl)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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