goShinyPlot: goShinyPlot

In tbep-tech/tbepRSparrow: RSPARROW: An R system for SPARROW modeling

Description

function to execute plots in shiny

Executed By: shinyMap2.R
Executes Routines:

• interactiveBatchRun.R

• compileALL.R

• convertHotTables.R

• mapSiteAttributes.R

• predictMaps.R

• predictScenarios.R

• shinyErrorTrap.R

• sourceRedFunc.R

• unPackList.R

Usage

goShinyPlot(input, output, session, choices, button, badSettings, errMsg,
  file.output.list, map_uncertainties, BootUncertainties, data_names,
  mapping.input.list, subdata, SelParmValues, sitedata, estimate.list,
  JacobResults, ConcFactor, DataMatrix.list, dlvdsgn,
  reach_decay_specification, reservoir_decay_specification,
  scenario.input.list, add_vars, batch_mode, RSPARROW_errorOption)

Arguments

input	top level interactive user input in Shiny app
output	shiny list object for session output
session	active shiny session
choices	data.frame output of function createInteractiveChoices.R
button	character string indicating which button was clicked by the user in the shiny app
badSettings	data.frame of row and column number is rhandsontables with invalid entries in the shiny app
errMsg	character string custom message indicating invalid entries in the shiny app
map_uncertainties	Vector of user selected uncertainty parameters to map, if uncertainty analysis was not run NA
BootUncertainties	Uncertainty values if available, if uncertainty analysis was not run NA
data_names	data.frame of variable metadata from data_Dictionary.csv file
subdata	data.frame input data (subdata)
SelParmValues	selected parameters from parameters.csv using condition ifelse((parmMax > 0 | (parmType=="DELIVF" & parmMax>=0)) & (parmMin<parmMax) & ((parmType=="SOURCE" & parmMin>=0) | parmType!="SOURCE")
sitedata	Sites selected for calibration using subdata[(subdata$depvar > 0), ]
JacobResults	list output of Jacobian first-order partial derivatives of the model residuals estimateNLLSmetrics.R contained in the estimate.list object. For more details see documentation Section 5.2.4.5.
ConcFactor	the concentration conversion factor, computed as Concentration = load / discharge * ConcFactor
dlvdsgn	design matrix imported from design_matrix.csv
reach_decay_specification	the SAS IML reach decay function code from sparrow_control
reservoir_decay_specification	the SAS IML reservoir decay function code from sparrow_control
add_vars	additional variables specified by the setting add_vars to be included in prediction, yield, and residuals csv and shape files
batch_mode	yes/no character string indicating whether RSPARROW is being run in batch mode
RSPARROW_errorOption

tbep-tech/tbepRSparrow documentation built on Oct. 9, 2020, 6:24 a.m.