validateMetrics: validateMetrics

In tbep-tech/tbepRSparrow: RSPARROW: An R system for SPARROW modeling

Description

Computes all model performance and other summary metrics and diagnostics for the estimated model for the validation sites, as reported in the ~/estimate/(run_id)_summary.txt file.

Executed By: estimate.R
Executes Routines:

• getVarList.R

• named.list.R

• unPackList.R

• validateFevalNoadj.R

Usage

validateMetrics(classvar, estimate.list, dlvdsgn, Vsites.list, yieldFactor,
  SelParmValues, subdata, vsitedata, DataMatrix.list)

Arguments

classvar	character vector of user specified spatially contiguous discrete classification variables from sparrow_control. First element is reach classification variable.
dlvdsgn	design matrix imported from design_matrix.csv
yieldFactor	numeric control setting to specify the yield conversion factor, computed as Yield = load / demtarea * yieldFactor
SelParmValues	selected parameters from parameters.csv using condition ifelse((parmMax > 0 | (parmType=="DELIVF" & parmMax>=0)) & (parmMin<parmMax) & ((parmType=="SOURCE" & parmMin>=0) | parmType!="SOURCE")
subdata	data.frame input data (subdata)
vsitedata	sitedata for validation. Calculated by subdata[(subdata$vdepvar > 0), ]

Value

validate.metrics.list named list including the vANOVA.list and vMdiagnostics.list

tbep-tech/tbepRSparrow documentation built on Oct. 9, 2020, 6:24 a.m.