Files in tchitchek-lab/SPADEVizR
SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/classes.R
R/export.R
R/imports.R
R/misc.R
R/models.R
R/plots.R
R/prints.R
R/qc.R
R/reports.R
R/stats.R
R/utils.R
R/viewers.R
README.md
README/AbundantClusters-1.png
README/AnnotateClusters-1.png
README/BiplotViewer-1.png
README/BoxplotViewer-1.png
README/ClassificationViewer-1.png
README/CorrelatedClusters-1.png
README/CountViewer-1.png
README/DistogramViewer-1.png
README/KineticViewer-1.png
README/MDSViewer_clusters-1.png
README/MDSViewer_samples-1.png
README/PhenoViewer-1.png
README/SPADEVizR-qcreport-SmallClusters_heatmap.pdf
README/SPADEVizR-qcreport-UniformClusters_density.pdf
README/SPADEVizR-qcreport-UniformClusters_heatmap.pdf
README/SPADEVizR-report.pdf
README/SmallClustersHeatmap.png
README/StreamgraphViewer_absolute-1.png
README/StreamgraphViewer_relative-1.png
README/TreeViewer-1.png
README/UMLDiagram.png
README/UniformClustersDensities.png
README/UniformClustersHeatmap.png
README/VolcanoViewer-1.png
README/coxplot.clusters-1.png
README/coxprovidedsurvivalcurve-1.png
README/coxsamples-1.png
README/glm-clusters-1.png
README/glm-samples-1.png
README/logoSPADEVizR.png
README/plot.HeatmapViewer-1.png
README/rfm-depth-1.png
README/rfm-samples-1.png
README/rfm-vimp-1.png
man/AC-class.Rd
man/AP-class.Rd
man/CC-class.Rd
man/DAC-class.Rd
man/MDSViewer.Rd
man/Results-class.Rd
man/abundantClustersViewer.Rd
man/annotateClusters.Rd
man/assignContext-methods.Rd
man/biplotViewer.Rd
man/boxplotViewer.Rd
man/circlesPackingViewer.Rd
man/classifyAbundanceProfiles.Rd
man/correlatedClustersViewer.Rd
man/countViewer.Rd
man/createReport.Rd
man/distogramViewer.Rd
man/export-methods.Rd
man/generateCPHM.Rd
man/generateGLM.Rd
man/generateRFM.Rd
man/heatmapViewer.Rd
man/identifyAC.Rd
man/identifyCC.Rd
man/identifyDAC.Rd
man/importResultsFromCLR.ACS.Rd
man/importResultsFromCLR.CSV.Rd
man/importResultsFromFCS.Rd
man/importResultsFromSPADE.Rd
man/importResultsFromTables.Rd
man/kineticsViewer.Rd
man/load.flowSet.Rd
man/mergeClusters.Rd
man/phenoViewer.Rd
man/plot-methods.Rd
man/print-methods.Rd
man/qcSmallClusters.Rd
man/qcUniformClusters.Rd
man/removeClusters.Rd
man/show-methods.Rd
man/streamgraphViewer.Rd
man/treeViewer.Rd
man/unload.flowSet-methods.Rd
man/volcanoViewer.Rd
