API for tdrose/mosbi
Molecular Signature identification using Biclustering
| Global functions | |
|---|---|
| NoBFBiclusters | Man page |
| NoBicARE | Source code |
| NoBiclust | Source code |
| NoFabia | Source code |
| NoIsa | Source code |
| algohistogram | Man page |
| apply_threshold | Man page |
| apply_threshold,bicluster_net-method | Man page |
| apply_threshold,cooccurrence_net-method | Man page |
| attr_overlap | Man page Source code |
| attributeConnector | Man page Source code |
| attribute_graph | Man page Source code |
| bicluster | Man page |
| bicluster-class | Man page |
| bicluster_heatmap | Man page |
| bicluster_heatmap,bicluster,matrix-method | Man page |
| bicluster_net | Man page |
| bicluster_net-class | Man page |
| bicluster_net_to_igraph | Man page |
| bicluster_net_to_igraph,bicluster_net-method | Man page |
| bicluster_network | Man page Source code |
| bicluster_pie | Source code |
| bicluster_to_matrix | Man page |
| bicluster_to_matrix,matrix,bicluster-method | Man page |
| biclusters_pie | Source code |
| check_names | Man page |
| check_pie | Source code |
| clean_bicluster_list | Man page |
| colhistogram | Man page |
| cooccurrence_net | Man page |
| cooccurrence_net-class | Man page |
| cooccurrence_net_to_igraph | Man page |
| cooccurrence_net_to_igraph,cooccurrence_net-method | Man page |
| cpp_matrix_subsetting | Man page |
| detect_elements | Man page |
| dim,bicluster-method | Man page |
| distance_matrix | Man page |
| ensemble_biclusters | Man page Source code |
| extract_bf | Source code |
| extract_biclusters_from_rownames | Source code |
| feature_louvain_overlap | Man page Source code |
| feature_network | Man page Source code |
| filter_bicluster_size | Man page |
| filter_biclusters | Man page Source code |
| filter_matrix | Man page Source code |
| filter_subsets | Man page |
| full_graph | Man page |
| getAkmbiclustClusters | Man page Source code |
| getBFCluster | Man page |
| getBicAREbiclusters | Man page Source code |
| getBiclustClusters | Man page Source code |
| getBiclustpyClusters | Man page Source code |
| getFabiaClusters | Man page Source code |
| getIsaClusters | Man page Source code |
| getQUBIC2biclusters | Man page |
| get_adjacency | Man page |
| get_adjacency,bicluster_net-method | Man page |
| get_algorithms | Man page Source code |
| get_bic_net_algorithms | Man page |
| get_bic_net_algorithms,bicluster_net-method | Man page |
| get_biclusters | Man page Source code |
| get_communities | Source code |
| get_louvain_communities | Man page |
| get_louvain_communities,bicluster_net-method | Man page |
| get_louvain_communities,cooccurrence_net-method | Man page |
| getallBFClusters | Man page |
| has_names | Man page |
| is_biclust | Source code |
| is_subset_or_identical | Man page |
| mouse_data | Man page |
| network_edge_strength | Man page |
| network_edge_strength_float | Man page |
| node_size | Man page Source code |
| occurance_matrix | Man page Source code |
| occurance_table | Man page Source code |
| org_similarity | Source code |
| p_overlap | Man page |
| p_overlap_2d | Man page |
| p_overlap_2d_higher | Man page |
| p_overlap_higher | Man page |
| plot,bicluster_net,missing-method | Man page |
| plot,cooccurrence_net,missing-method | Man page |
| plot_algo_network | Man page Source code |
| plot_error_model | Source code |
| plot_piechart_bicluster_network | Man page Source code |
| random_f_similarities | Source code |
| random_similarities | Source code |
| randomize_matrix | Man page Source code |
| replace_threshold | Man page Source code |
| replace_values | Man page |
| replace_values_float | Man page |
| rowhistogram | Man page |
| run_akmbiclust | Man page Source code |
| run_bimax | Man page Source code |
| run_cc | Man page Source code |
| run_fabia | Man page Source code |
| run_isa | Man page Source code |
| run_plaid | Man page Source code |
| run_qubic | Man page Source code |
| run_quest | Man page Source code |
| run_spectral | Man page Source code |
| run_unibic | Man page Source code |
| run_xmotifs | Man page Source code |
| sample_biclusters | Man page |
| select_biclusters_from_bicluster_network | Man page |
| select_biclusters_from_bicluster_network,bicluster_net,list-meth | Man page |
| set_bicluster_names | Man page |
| set_bicluster_names,bicluster,matrix-method | Man page |
| similarity_matrix | Man page |
| transpose_bicluster | Man page |
| validate_bicluster | Man page |
| write_graphml | Man page |
| write_matrix | Man page |
| zero_subsetting | Man page |
