depthsPerRegion | R Documentation |
Summarize the depth per region of a given length range across samples.
depthsPerRegion(
dat,
min.reg.len = 30,
max.reg.len = 500,
min.reg.dep = 10,
max.reg.dep = 200,
min.reg.frac = 0.25
)
dat |
data.table (see freadBedtoolsCoverageHist) |
min.reg.len |
minimum length of a region to be considered |
max.reg.len |
maximum length of a region to be considered |
min.reg.dep |
minimum depth of a region when reporting the number of interesting regions |
max.reg.dep |
maximum depth of a region when reporting the number of interesting regions |
min.reg.frac |
minimum fraction of a region when reporting the number of interesting regions |
data.table
Timothee Flutre
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