depthsPerSample: Depth per sample across regions

In timflutre/rutilstimflutre: Timothee Flutre's personal R code

Depth per sample across regions

Description

Summarize the depth per sample across regions of a given length range.

Usage

depthsPerSample(
  dat,
  min.reg.len = 30,
  max.reg.len = 500,
  min.reg.dep = 10,
  max.reg.dep = 200,
  min.reg.frac = 0.25
)

Arguments

dat	data.table (see freadBedtoolsCoverageHist)
min.reg.len	minimum length of a region to be considered
max.reg.len	maximum length of a region to be considered
min.reg.dep	minimum depth of a region when reporting the number of interesting regions
max.reg.dep	maximum depth of a region when reporting the number of interesting regions
min.reg.frac	minimum fraction of a region when reporting the number of interesting regions

Value

data.table

Author(s)

Timothee Flutre

timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.