dimVcf: VCF dimensions
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
dimVcf R Documentation
VCF dimensions
Description
Return the dimensions of a VCF file, i.e. the number of sites (rows) and samples (columns)
Usage
dimVcf(vcf.file, software = "Rsamtools", genome = "", yieldSize = 10000)
Arguments
vcf.file
path to the VCF file (if the bgzip index doesn't exist in the same directory, it will be created)
software
name of the software with which to obtain the dimension of the file (Rsamtools/grep)
genome
genome identifier (e.g. "VITVI_12x2")
yieldSize
number of records to yield each time the file is read from
Value
vector
Author(s)
Timothee Flutre
timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| dimVcf | R Documentation |
VCF dimensions
Description
Return the dimensions of a VCF file, i.e. the number of sites (rows) and samples (columns)
Usage
dimVcf(vcf.file, software = "Rsamtools", genome = "", yieldSize = 10000)
Arguments
vcf.file |
path to the VCF file (if the bgzip index doesn't exist in the same directory, it will be created) |
software |
name of the software with which to obtain the dimension of the file (Rsamtools/grep) |
genome |
genome identifier (e.g. "VITVI_12x2") |
yieldSize |
number of records to yield each time the file is read from |
Value
vector
Author(s)
Timothee Flutre
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.