distSnpPairs: Distance between SNP pairs
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
distSnpPairs R Documentation
Distance between SNP pairs
Description
For each SNP pair, return the number of "blocks" (i.e. nucleotides) between both SNPs via the distance function.
Usage
distSnpPairs(snp.pairs, snp.coords, nb.cores = 1, verbose = 1)
Arguments
snp.pairs
data.frame with two columns "loc1" and "loc2"
snp.coords
data.frame with SNP identifiers as row names, and two columns, "chr" and "coord" (or "pos")
nb.cores
the number of cores to use
verbose
verbosity level (0/1)
Value
vector
Author(s)
Timothee Flutre
See Also
estimLd, distConsecutiveSnps
timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.
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| distSnpPairs | R Documentation |
Distance between SNP pairs
Description
For each SNP pair, return the number of "blocks" (i.e. nucleotides) between both SNPs via the distance function.
Usage
distSnpPairs(snp.pairs, snp.coords, nb.cores = 1, verbose = 1)
Arguments
snp.pairs |
data.frame with two columns "loc1" and "loc2" |
snp.coords |
data.frame with SNP identifiers as row names, and two columns, "chr" and "coord" (or "pos") |
nb.cores |
the number of cores to use |
verbose |
verbosity level (0/1) |
Value
vector
Author(s)
Timothee Flutre
See Also
estimLd, distConsecutiveSnps
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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