dsVcf2dose | R Documentation |
Non-bi-allelic variants are discarded. From Martin Morgan (see http://grokbase.com/t/r/bioconductor/135b460s2b/bioc-how-to-convert-genotype-snp-matrix-to-nucleotide-genotypes).
dsVcf2dose(vcf)
vcf |
CollapsedVCF (see pkg VariantAnnotation) |
matrix (in numeric mode
) with variants in rows and samples in columns
Timothee Flutre
vcf2dosage
, gtVcf2dose
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