estimSnpMaf: Minor allele frequencies

In timflutre/rutilstimflutre: Timothee Flutre's personal R code

Minor allele frequencies

Description

Estimate minor allele frequencies of bi-allelic SNPs.

Usage

estimSnpMaf(X = NULL, afs = NULL)

Arguments

X	matrix of bi-allelic SNP genotypes encoded in allele doses in [0,2], with genotypes in rows and SNPs in columns; missing values should be encoded as NA
afs	vector of allele frequencies; if NULL, X should be specified, and the allele frequencies will be estimated with estimSnpAf

Value

vector

Author(s)

Timothee Flutre

See Also

estimSnpAf

timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.