gtVcf2dose: Convert GT to dosage
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
gtVcf2dose R Documentation
Convert GT to dosage
Description
Non-bi-allelic variants are discarded.
From Martin Morgan (see http://grokbase.com/t/r/bioconductor/135b460s2b/bioc-how-to-convert-genotype-snp-matrix-to-nucleotide-genotypes).
Usage
gtVcf2dose(vcf)
Arguments
vcf
CollapsedVCF (see pkg VariantAnnotation)
Value
matrix (in integer mode) with variants in rows and samples in columns
Author(s)
Timothee Flutre
See Also
vcf2dosage, gtVcf2genoClasses, dsVcf2dose
timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.
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| gtVcf2dose | R Documentation |
Convert GT to dosage
Description
Non-bi-allelic variants are discarded. From Martin Morgan (see http://grokbase.com/t/r/bioconductor/135b460s2b/bioc-how-to-convert-genotype-snp-matrix-to-nucleotide-genotypes).
Usage
gtVcf2dose(vcf)
Arguments
vcf |
CollapsedVCF (see pkg VariantAnnotation) |
Value
matrix (in integer mode) with variants in rows and samples in columns
Author(s)
Timothee Flutre
See Also
vcf2dosage, gtVcf2genoClasses, dsVcf2dose
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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