indexVcfFile: Index a VCF file
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
indexVcfFile R Documentation
Index a VCF file
Description
Index a VCF file if it exists and if its index file doesn't already exist or is older.
Usage
indexVcfFile(vcf.file, software = "Rsamtools", nb.cores = 1)
Arguments
vcf.file
path to a VCF file (must be sorted!)
software
name of the software with which to index the file (Rsamtools/bcftools)
nb.cores
number of threads for "bcftools"
Value
invisible path to the index file
Author(s)
Timothee Flutre
See Also
sortVcfFile
timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.
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| indexVcfFile | R Documentation |
Index a VCF file
Description
Index a VCF file if it exists and if its index file doesn't already exist or is older.
Usage
indexVcfFile(vcf.file, software = "Rsamtools", nb.cores = 1)
Arguments
vcf.file |
path to a VCF file (must be sorted!) |
software |
name of the software with which to index the file (Rsamtools/bcftools) |
nb.cores |
number of threads for "bcftools" |
Value
invisible path to the index file
Author(s)
Timothee Flutre
See Also
sortVcfFile
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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