makeCross: Cross

In timflutre/rutilstimflutre: Timothee Flutre's personal R code

Cross

Description

Make a cross. If two different genotypes are given, then a fecundation is made with one gamete from each genotype. If the same genotype is given twice, an autofecondation is made with two different gametes from this genotype. If a single genotype is given, a haplodiploidization is made with a single gamete from this genotype.

Usage

makeCross(
  haplos.par1,
  loc.crossovers.par1,
  haplos.par2 = NULL,
  loc.crossovers.par2 = NULL,
  child.name = NULL,
  howto.start.haplo = 0,
  verbose = 1
)

Arguments

haplos.par1	list of matrices (one per chromosome) for the first parent
loc.crossovers.par1	list of vectors (one per chromosome) for the first parent
haplos.par2	list of matrices (one per chromosome) for the second parent
loc.crossovers.par2	list of vectors (one per chromosome) for the second parent
child.name	identifier of the child (if NULL, <parent1>"-x-"<parent2> or <parent1>"-hd")
howto.start.haplo	if 0, haplotypes with which to start the gametes will be chosen at random; but one can also specify 1 (always the first haplotype) or 2 (always the second haplotype)
verbose	verbosity level (0/1)

Value

list of matrices (one per chromosome) for the child

Author(s)

Timothee Flutre

See Also

makeCrosses, drawLocCrossovers, makeGameteSingleInd, fecundation

timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.