mummer2granges: MUMmer
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
mummer2granges R Documentation
MUMmer
Description
Convert a data.frame containing alignments coordinates from MUMmer into a GRanges object.
Usage
mummer2granges(coords)
Arguments
coords
data.frame with 13 columns (see loadMummer)
Value
GRanges
Author(s)
Timothee Flutre
See Also
loadMummer
Examples
## Not run: ## MUMmer should be run beforehand, see the example of `loadMummer`:
coords <- loadMummer("out-nucmer_filter_coords.txt.gz", asGRanges=FALSE)
coords.gr <- mummer2granges(coords)
## End(Not run)
timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.
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| mummer2granges | R Documentation |
MUMmer
Description
Convert a data.frame containing alignments coordinates from MUMmer into a GRanges object.
Usage
mummer2granges(coords)
Arguments
coords |
data.frame with 13 columns (see |
Value
GRanges
Author(s)
Timothee Flutre
See Also
loadMummer
Examples
## Not run: ## MUMmer should be run beforehand, see the example of `loadMummer`:
coords <- loadMummer("out-nucmer_filter_coords.txt.gz", asGRanges=FALSE)
coords.gr <- mummer2granges(coords)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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