parseCgGroup: Parse CarthaGene's output

In timflutre/rutilstimflutre: Timothee Flutre's personal R code

Parse CarthaGene's output

Description

Parse the output of CarthaGene's command "group".

Usage

parseCgGroup(out.group, mrk.info = NULL, mrk2chr = NULL, verbose = 1)

Arguments

out.group	vector of character output from runCarthagene corresponding to "group"
mrk.info	data frame output from parseCgMrkinfo (optional; useful to have the marker names instead of only the marker identifiers)
mrk2chr	named vector which values are markers and names are chromosomes; before usage, marker names ending in "_m" (an indication of parental coding) will be edited to remove such a suffix
verbose	verbosity level (0/1)

Value

data frame with at least two columns, "linkage.group" and "id", another column, "locus", if mrk.info is provided, and another column, "chr", if mrk2chr is provided

Author(s)

Timothee Flutre

timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.