phasedJoinMapCP2qtl: Genotype coding
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
phasedJoinMapCP2qtl R Documentation
Genotype coding
Description
Convert genotypes encoded in the JoinMap format for cross type "CP" with known parental phases into the format used by the qtl package.
Usage
phasedJoinMapCP2qtl(x, verbose = 1)
Arguments
x
data frame in the JoinMap format, for instance from genoClasses2JoinMap; any column named "clas" will be discarded from the start; columns named "seg" and "phase" should be present; a column named "locus" should be present unless row names are given; all other columns are supposed to correspond to genotypes
verbose
verbosity level (0/1/2)
Value
matrix in the "qtl" format
Author(s)
Timothee Flutre
See Also
correspondenceJoinMap2qtl, updateJoinMap
timflutre/rutilstimflutre documentation built on Aug. 18, 2024, 7:43 p.m.
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| phasedJoinMapCP2qtl | R Documentation |
Genotype coding
Description
Convert genotypes encoded in the JoinMap format for cross type "CP" with known parental phases into the format used by the qtl package.
Usage
phasedJoinMapCP2qtl(x, verbose = 1)
Arguments
x |
data frame in the JoinMap format, for instance from |
verbose |
verbosity level (0/1/2) |
Value
matrix in the "qtl" format
Author(s)
Timothee Flutre
See Also
correspondenceJoinMap2qtl, updateJoinMap
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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