phasedJoinMapCP2qtl: Genotype coding

View source: R/quantgen.R

phasedJoinMapCP2qtlR Documentation

Genotype coding

Description

Convert genotypes encoded in the JoinMap format for cross type "CP" with known parental phases into the format used by the qtl package.

Usage

phasedJoinMapCP2qtl(x, verbose = 1)

Arguments

x

data frame in the JoinMap format, for instance from genoClasses2JoinMap; any column named "clas" will be discarded from the start; columns named "seg" and "phase" should be present; a column named "locus" should be present unless row names are given; all other columns are supposed to correspond to genotypes

verbose

verbosity level (0/1/2)

Value

matrix in the "qtl" format

Author(s)

Timothee Flutre

See Also

correspondenceJoinMap2qtl, updateJoinMap


timflutre/rutilstimflutre documentation built on Aug. 18, 2024, 7:43 p.m.