plotLdSry: Pairwise linkage disequilibrium

In timflutre/rutilstimflutre: Timothee Flutre's personal R code

Pairwise linkage disequilibrium

Description

Plots a summary of linkage disequilibrium between pairs of SNPs per non-overlapping bin (mean, median and quartiles 1 and 3).

Usage

plotLdSry(
  x,
  y,
  bin.len = 10^3,
  max.dist = 10^5,
  main = "",
  xlab = "Physical distance (bp)",
  ylab = "Summarized LD"
)

Arguments

x	vector of distances between SNPs (see distSnpPairs)
y	vector of LD estimates (see estimLd)
bin.len	length of each bin
max.dist	maximum distance between SNPs to consider
main	main title
xlab	label for the x axis
ylab	label for the y axis

Value

invisible data frame with the summary per bin

Author(s)

Timothee Flutre

See Also

estimLd, distSnpPairs, plotLd

timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.