plotPhyDistVsLdSry: Pairwise linkage disequilibrium

In timflutre/rutilstimflutre: Timothee Flutre's personal R code

Pairwise linkage disequilibrium

Description

Plots a summary of linkage disequilibrium between pairs of SNPs versus physical distance.

Usage

plotPhyDistVsLdSry(
  x,
  y,
  xlab,
  ylab,
  main = "",
  fitted.loess = NULL,
  fitted.lm = NULL,
  fitted.loglm = NULL,
  fitted.asyreg = NULL,
  fitted.biexp = NULL,
  ...
)

Arguments

x	vector of pysical coordinates of mid bins (see output of summarizeLd)
y	vector of LD estimates (see output of summarizeLd)
xlab	label for the x axis
ylab	label for the y axis
main	main title
fitted.loess	see the output of fitPhyDistVsLd
fitted.lm	see the output of fitPhyDistVsLd
fitted.loglm	see the output of fitPhyDistVsLd
fitted.asyreg	see the output of fitPhyDistVsLd
fitted.biexp	see the output of fitPhyDistVsLd
...	arguments passed to plot

Value

nothing

Author(s)

Timothee Flutre

See Also

summarizeLd, fitPhyDistVsLd

timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.