quantilesBinnedSnpData: Quantiles of allelic R2 after binning

In timflutre/rutilstimflutre: Timothee Flutre's personal R code

Quantiles of allelic R2 after binning

Description

Calculate the quantiles of allelic R2 after binning.

Usage

quantilesBinnedSnpData(
  snp.data,
  snp.bins,
  quant.probs = seq(0, 1, 0.25),
  verbose = 1
)

Arguments

snp.data	numeric vector of SNP data (one value per SNP) with SNP identifiers as names
snp.bins	factor as returned by cut applied to SNP data (percentage of missing data, minor allele frequencies, etc) with SNP identifiers as names
quant.probs	numeric vector of probabilities with values in [0,1] to be used with quantile
verbose	verbosity level (0/1)

Value

list with the quantiles per bin, as well as the midpoint of each bin

Author(s)

Timothee Flutre

timflutre/rutilstimflutre documentation built on Feb. 12, 2025, 11:35 p.m.