readVcfSubset: Read VCF
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
readVcfSubset R Documentation
Read VCF
Description
Read a subset of a VCF file
Usage
readVcfSubset(vcf.file, genome = "", seq.id, seq.start, seq.end)
Arguments
vcf.file
path to the VCF file (bgzip index should exist in same directory)
genome
genome identifier (e.g. "VITVI_12x2")
seq.id
sequence identifier to work on (e.g. "chr2")
seq.start
start of the sequence to work on (1-based coordinate)
seq.end
end of the sequence to work on (1-based coordinate)
Value
CollapsedVCF (see pkg VariantAnnotation)
Author(s)
Timothee Flutre
timflutre/rutilstimflutre documentation built on Feb. 12, 2025, 11:35 p.m.
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| readVcfSubset | R Documentation |
Read VCF
Description
Read a subset of a VCF file
Usage
readVcfSubset(vcf.file, genome = "", seq.id, seq.start, seq.end)
Arguments
vcf.file |
path to the VCF file (bgzip index should exist in same directory) |
genome |
genome identifier (e.g. "VITVI_12x2") |
seq.id |
sequence identifier to work on (e.g. "chr2") |
seq.start |
start of the sequence to work on (1-based coordinate) |
seq.end |
end of the sequence to work on (1-based coordinate) |
Value
CollapsedVCF (see pkg VariantAnnotation)
Author(s)
Timothee Flutre
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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