recodeIntoDominant: SNP genotypes
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
recodeIntoDominant R Documentation
SNP genotypes
Description
Recode SNP genotypes from additive to dominant.
Usage
recodeIntoDominant(X, simplify.imputed = FALSE)
Arguments
X
matrix of bi-allelic SNP genotypes encoded in allele doses in 0,1,2, with genotypes in rows and SNPs in columns; missing values should be encoded as NA
simplify.imputed
if TRUE, imputed genotypes will be considered as homozygotes if less than 0.66 or more than 1.33, and heterozygotes otherwise
Value
matrix with genotypes in 0,1
Author(s)
Timothee Flutre
timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.
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| recodeIntoDominant | R Documentation |
SNP genotypes
Description
Recode SNP genotypes from additive to dominant.
Usage
recodeIntoDominant(X, simplify.imputed = FALSE)
Arguments
X |
matrix of bi-allelic SNP genotypes encoded in allele doses in 0,1,2, with genotypes in rows and SNPs in columns; missing values should be encoded as NA |
simplify.imputed |
if TRUE, imputed genotypes will be considered as homozygotes if less than 0.66 or more than 1.33, and heterozygotes otherwise |
Value
matrix with genotypes in 0,1
Author(s)
Timothee Flutre
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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