rngVcf2df | R Documentation |
Non-bi-allelic variants are discarded.
rngVcf2df(
vcf,
with.coords = TRUE,
with.alleles = TRUE,
single.ref = FALSE,
single.alt = FALSE
)
vcf |
CollapsedVCF (see pkg VariantAnnotation) |
with.coords |
if TRUE, the output will contain variant coordinates |
with.alleles |
if TRUE, the output will contain variant alleles |
single.ref |
if TRUE, only records with a single 'ref' are kept |
single.alt |
if TRUE, only records with a single 'alt' are kept |
data.frame with variants in rows
Timothee Flutre
subsetVcfOnAllelicity
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