simulGenosDose: Genotypes
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
simulGenosDose R Documentation
Genotypes
Description
Simulate SNP genotypes as allele dose additively encoded, i.e. 0,1,2.
Usage
simulGenosDose(nb.genos, nb.snps, geno.ids = NULL, snp.ids = NULL, mafs = NULL)
Arguments
nb.genos
number of genotypes (i.e. individuals)
nb.snps
number of SNPs
geno.ids
vector of genotype identifiers (if NULL, will be "geno001", etc)
snp.ids
vector of SNP identifiers (if NULL, will be "snp001", etc)
mafs
vector of minor allele frequencies; by default, they are uniformly distributed between 0.05 and 0.5
Value
matrix with genotypes in rows and SNPs in columns
Author(s)
Peter Carbonetto [aut], Timothee Flutre [ctb]
timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| simulGenosDose | R Documentation |
Genotypes
Description
Simulate SNP genotypes as allele dose additively encoded, i.e. 0,1,2.
Usage
simulGenosDose(nb.genos, nb.snps, geno.ids = NULL, snp.ids = NULL, mafs = NULL)
Arguments
nb.genos |
number of genotypes (i.e. individuals) |
nb.snps |
number of SNPs |
geno.ids |
vector of genotype identifiers (if NULL, will be "geno001", etc) |
snp.ids |
vector of SNP identifiers (if NULL, will be "snp001", etc) |
mafs |
vector of minor allele frequencies; by default, they are uniformly distributed between 0.05 and 0.5 |
Value
matrix with genotypes in rows and SNPs in columns
Author(s)
Peter Carbonetto [aut], Timothee Flutre [ctb]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.