simulTrait3: Simul breeding game

In timflutre/rutilstimflutre: Timothee Flutre's personal R code

Simul breeding game

Description

Simulate phenotypes of trait 3.

Usage

simulTrait3(
  dat,
  X,
  afs = NULL,
  subset.snps = NULL,
  qtn.id = NULL,
  resist.genos = NULL,
  prob.resist.no.qtl = 0.02,
  verbose = 1
)

Arguments

dat	data.frame specifying the structure of the initial data set of phenotypes
X	matrix of bi-allelic SNP genotypes encoded in allele dose in 0,1,2
afs	vector of allele frequencies (ignored if qtn.id is not NULL)
subset.snps	vector of SNP identifiers to which the QTN should belong (ignored if qtn.id is not NULL)
qtn.id	identifier of the causal SNP (QTN)
resist.genos	vector of genotypes in allele dose at the causal SNP providing the resistance (ignored if qtn.id is NULL)
prob.resist.no.qtl	probability for a genotype without the QTL to be resistant a year with the pathogen
verbose	verbosity level (0/1)

Value

list

Author(s)

Timothee Flutre

See Also

makeDfInitPhenos

timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.