sortVcfFile: Sort a VCF file
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
sortVcfFile R Documentation
Sort a VCF file
Description
Sort a VCF file with bcftools sort (requires bcftools >= 1.6)
Usage
sortVcfFile(in.vcf.file, out.vcf.file)
Arguments
in.vcf.file
path to the input VCF file
out.vcf.file
path to the output VCF file (if it is the same as in.vcf.file, the input VCF file will be sorted into a temporary file which will then be copied back to it)
Value
invisible path to the output file
Author(s)
Timothee Flutre
See Also
indexVcfFile
timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| sortVcfFile | R Documentation |
Sort a VCF file
Description
Sort a VCF file with bcftools sort (requires bcftools >= 1.6)
Usage
sortVcfFile(in.vcf.file, out.vcf.file)
Arguments
in.vcf.file |
path to the input VCF file |
out.vcf.file |
path to the output VCF file (if it is the same as |
Value
invisible path to the output file
Author(s)
Timothee Flutre
See Also
indexVcfFile
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.