writeGenosFimpute | R Documentation |
Write SNP genotypes into a file formatted for FImpute.
writeGenosFimpute(X, genos.file, chips = NULL)
X |
matrix of bi-allelic SNP genotypes encoded in number of copies of the 2nd allele, i.e. as allele doses in 0,1,2, with genotypes in rows and SNPs in columns; missing values should be encoded as NA; the maximum length of genotypes identifiers is 30 characters |
genos.file |
path to the file in which genotypes will be saved |
chips |
if several microarrays were used, provide a vector with chip numbers which names are genotype identifiers (same as in |
nothing
Timothee Flutre
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