setDefaultEdgeTargetArrowColor: setDefaultEdgeTargetArrowColor

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

In the specified CytoscapeConnection, stipulate the default color for all edge target arrows other than those mentioned in an edge target arrow color rule.

Usage

setDefaultEdgeTargetArrowColor(obj, new.color, vizmap.style.name = "default")

Arguments

obj	a CytoscapeConnectionClass object.
new.color	a String object, a hex string, of the form '#RRGGBB'.
vizmap.style.name	a String object, if this vizmap style needs to be distinguished from the default type.

Value

None.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

See Also

setDefaultNodeShape setDefaultNodeColor setDefaultNodeSize setDefaultNodeColor setDefaultNodeBorderColor setDefaultNodeBorderWidth setDefaultNodeFontSize setDefaultNodeLabelColor setDefaultEdgeLineWidth setDefaultEdgeFontSize setEdgeColorRule

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('setDefaultEdgeTargetArrowColor test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork(cw, 'force-directed')
  setDefaultEdgeTargetArrowColor (cw, '#0F0F0F')
  setEdgeTargetArrowShapeDirect (cw, c('C (undefined) A', 'B (synthetic lethal) C'), 'ARROW_SHORT')
  # redraw (cw) --> not required anymore

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.