setEdgeLineWidthRule: setEdgeLineWidthRule

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

Specify the edge attribute which controls the thickness of the edges displayed in the graph. This is currently only a lookup mapping. An interpolated mapping will be added in the future.

Usage

setEdgeLineWidthRule(obj, edge.attribute.name, attribute.values, line.widths,
                     default.width, vizmap.style.name = 'default')

Arguments

obj	a CytoscapeWindowClass object.
edge.attribute.name	the edge attribute whose values will, when this rule is applied, determine the edgeLineWidth on each edge.
attribute.values	observed values of the specified attribute on the edges.
line.widths	the corresponding widths.
default.width	use this where the rule fails to apply
vizmap.style.name	visual style name, defaults to the style 'default'.

Value

None.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

See Also

setNodeBorderColorRule (detailed example) setEdgeColorRule

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('setEdgeLineWidthRule.test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork (cw, 'force-directed')
  edge.attribute.values <- c('phosphorylates', 'synthetic lethal', 'undefined')
  line.widths <- c(0, 8, 16)
  setEdgeLineWidthRule (cw, 'edgeType', edge.attribute.values, line.widths)

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.