setNodeOpacityDirect: setNodeOpacityDirect

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

In the specified CytoscapeWindow, set the opacity of all aspectes of the specified node(s): fill color, border, label.

Usage

setNodeOpacityDirect(obj, node.names, new.values)

Arguments

obj	a CytoscapeWindowClass object.
node.names	one or more String objects.
new.values	one or more numeric objects, ranging from 0 to 255.

Value

None.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

See Also

setNodeFillOpacityDirect setNodeLabelOpacityDirect setNodeBorderOpacityDirect

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('setNodeOpacityDirect.test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork (cw, 'force-directed')
  setDefaultNodeBorderWidth (cw, 4)
  setDefaultNodeBorderColor(cw, '#0000FF')
  
  setNodeOpacityDirect (cw, 'A', 20)
  setNodeOpacityDirect (cw, c('B', 'C'), c(111, 133))
  setNodeOpacityDirect (cw, c('B', 'C'), 10)

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.