Files in tnaake/MatrixQCvis

Shiny-based interactive data-quality exploration for omics data

R/landingPage.R R/module_de.R R/module_dimensionreduction.R R/module_global.R R/module_measuredValues_missingValues.R R/module_samples.R R/module_values.R R/shinyQC.R R/tab_de.R R/tab_dimensionreduction.R R/tab_measuredvalues_missingvalues.R R/tab_samplesfeatures.R R/tab_values.R README.md inst/helpfiles/tabPanel_DE.md inst/helpfiles/tabPanel_DE_missingValue_FALSE.md inst/helpfiles/tabPanel_DE_missingValue_TRUE.md inst/helpfiles/tabPanel_Features.md inst/helpfiles/tabPanel_MA.md inst/helpfiles/tabPanel_MA_missingValue_FALSE.md inst/helpfiles/tabPanel_MA_missingValue_TRUE.md inst/helpfiles/tabPanel_NMDS.md inst/helpfiles/tabPanel_PCA.md inst/helpfiles/tabPanel_PCoA.md inst/helpfiles/tabPanel_UMAP.md inst/helpfiles/tabPanel_barNumberFeature_measured.md inst/helpfiles/tabPanel_barNumberFeature_missing.md inst/helpfiles/tabPanel_boxplot.md inst/helpfiles/tabPanel_boxplot_missingValue_FALSE.md inst/helpfiles/tabPanel_boxplot_missingValue_TRUE.md inst/helpfiles/tabPanel_cv.md inst/helpfiles/tabPanel_cv_missingValue_FALSE.md inst/helpfiles/tabPanel_cv_missingValue_TRUE.md inst/helpfiles/tabPanel_distMat.md inst/helpfiles/tabPanel_distMat_missingValue_FALSE.md inst/helpfiles/tabPanel_distMat_missingValue_TRUE.md inst/helpfiles/tabPanel_drift.md inst/helpfiles/tabPanel_drift_missingValue_FALSE.md inst/helpfiles/tabPanel_drift_missingValue_TRUE.md inst/helpfiles/tabPanel_ecdf.md inst/helpfiles/tabPanel_histFeatureSample_measured.md inst/helpfiles/tabPanel_histFeatureSample_missing.md inst/helpfiles/tabPanel_histFeature_measured.md inst/helpfiles/tabPanel_histFeature_missing.md inst/helpfiles/tabPanel_meanSd.md inst/helpfiles/tabPanel_meanSd_missingValue_FALSE.md inst/helpfiles/tabPanel_meanSd_missingValue_TRUE.md inst/helpfiles/tabPanel_mosaicSample.md inst/helpfiles/tabPanel_sets_measured.md inst/helpfiles/tabPanel_sets_missing.md inst/helpfiles/tabPanel_tSNE.md inst/helpfiles/tabPanel_upSet_measured.md inst/helpfiles/tabPanel_upSet_missing.md inst/report/report_qc.Rmd man/ECDF.Rd man/MAplot.Rd man/MAvalues.Rd man/barplotSamplesMeasuredMissing.Rd man/batchCorrectionAssay.Rd man/createBoxplot.Rd man/createDfFeature.Rd man/cv.Rd man/cvFeaturePlot.Rd man/dimensionReduction.Rd man/dimensionReductionPlot.Rd man/distSample.Rd man/distShiny.Rd man/driftPlot.Rd man/explVar.Rd man/extractComb.Rd man/featurePlot.Rd man/histFeature.Rd man/histFeatureCategory.Rd man/hist_sample.Rd man/hist_sample_num.Rd man/hoeffDPlot.Rd man/hoeffDValues.Rd man/imputeAssay.Rd man/measuredCategory.Rd man/mosaic.Rd man/normalizeAssay.Rd man/permuteExplVar.Rd man/plotCV.Rd man/plotPCALoadings.Rd man/plotPCAVar.Rd man/plotPCAVarPvalue.Rd man/samplesMeasuredMissing.Rd man/shinyQC.Rd man/sumDistSample.Rd man/tblPCALoadings.Rd man/transformAssay.Rd man/upsetCategory.Rd man/volcanoPlot.Rd tests/testthat.R tests/testthat/test_landingPage.R tests/testthat/test_module_de.R tests/testthat/test_module_dimensionreduction.R tests/testthat/test_module_global.R tests/testthat/test_module_measuredValues_missingValues.R tests/testthat/test_module_samples.R tests/testthat/test_module_values.R tests/testthat/test_shinyQC.R tests/testthat/test_tab_de.R tests/testthat/test_tab_dimensionreduction.R tests/testthat/test_tab_measuredvalues_missingvalues.R tests/testthat/test_tab_samplesfeatures.R tests/testthat/test_tab_values.R vignettes/MatrixQCvis.Rmd