bcpls: Network toolkit example input data
In topherconley/spacemap: A novel conditional graphical model for integrative genomics
Description
Usage
Format
Details
Description
Input for illustrating how to apply spaceMap's
network toolkit to data from the
Breast Cancer Proteogenomics Landscape Study (BCPLS)
by Mertins et. al., (2016, Nature).
Usage
1
Format
A list containing objects:
-
net spaceMap's Boot.Vote ensemble network for the BCPLS data.
-
yinfo Annotations for proteins (response variables).
-
xinfo Annotations for genomic copy number alterations (predictor variables).
-
bdeg Degree distributions of bootstrap ensemble replicates.
-
go2eg Mapping from Gene Ontology (GO) to proteins.
Details
The list bcpls is described in detail at
https://topherconley.github.io/spacemap/articles/neta.html#input.
topherconley/spacemap documentation built on May 31, 2019, 6:36 p.m.
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Description Usage Format Details
Description
Input for illustrating how to apply spaceMap's network toolkit to data from the Breast Cancer Proteogenomics Landscape Study (BCPLS) by Mertins et. al., (2016, Nature).
Usage
1 |
Format
A list containing objects:
-
netspaceMap's Boot.Vote ensemble network for the BCPLS data. -
yinfoAnnotations for proteins (response variables). -
xinfoAnnotations for genomic copy number alterations (predictor variables). -
bdegDegree distributions of bootstrap ensemble replicates. -
go2egMapping from Gene Ontology (GO) to proteins.
Details
The list bcpls is described in detail at
https://topherconley.github.io/spacemap/articles/neta.html#input.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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