Files in topherconley/spacemap
A novel conditional graphical model for integrative genomics

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/RcppExports.R R/bcpls.R R/bic.R R/cov2ParCor.R R/crossValidation.R R/cvVoteRDS.R R/formatPerformance.R R/initFit.R R/networkAnalysis.R R/remMap.R R/reportPerformance.R R/reprodEdge.R R/sim1.R R/space.R R/spacemap.R R/tuneVis.R README.Rmd README.md
_config.yml
_pkgdown.yml
data-raw/consolidate_bcpls_data.R data-raw/model1_11_20_250.R
data/bcpls.rda
data/sim1.rda
docs/LICENSE
docs/articles/basics.html
docs/articles/basics_files/d3-4.5.0/LICENSE
docs/articles/basics_files/d3-4.5.0/d3.min.js
docs/articles/basics_files/figure-html/unnamed-chunk-9-1.png
docs/articles/basics_files/forceNetwork-binding-0.4/forceNetwork.js
docs/articles/basics_files/htmlwidgets-0.8/htmlwidgets.js
docs/articles/ensemble.html
docs/articles/ensemble_files/figure-html/unnamed-chunk-1-1.png
docs/articles/ensemble_files/figure-html/unnamed-chunk-1-2.png
docs/articles/index.html
docs/articles/neta.html
docs/articles/tune_sim1.html
docs/articles/tuning.html
docs/articles/tuning_files/figure-html/unnamed-chunk-10-1.png
docs/articles/tuning_files/figure-html/unnamed-chunk-12-1.png
docs/articles/tuning_files/figure-html/unnamed-chunk-13-1.png
docs/articles/tuning_files/figure-html/unnamed-chunk-15-1.png
docs/articles/tuning_files/figure-html/unnamed-chunk-16-1.png
docs/articles/tuning_files/figure-html/unnamed-chunk-17-1.png
docs/articles/tuning_files/figure-html/unnamed-chunk-18-1.png
docs/articles/tuning_files/figure-html/unnamed-chunk-23-1.png
docs/authors.html
docs/contact.html
docs/figures/flow-chart-4.png
docs/index.html
docs/installation.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/reference/adj2igraph.html
docs/reference/adjacency.html
docs/reference/algoFDR.html
docs/reference/algoMCC.html
docs/reference/algoPower.html
docs/reference/bcpls.html
docs/reference/bicCondLike.html
docs/reference/bicLike.html
docs/reference/bootEnsemble.html
docs/reference/bootVote.html
docs/reference/cisTrans.html
docs/reference/cvPerf.html
docs/reference/cvVote.html
docs/reference/index.html
docs/reference/initFit.html
docs/reference/minScoreIndex.html
docs/reference/modAnalysis.html
docs/reference/modEnrich.html
docs/reference/neta.html
docs/reference/nonZeroUpper.html
docs/reference/nonZeroWhole.html
docs/reference/rankHub.html
docs/reference/reportHubs.html
docs/reference/reportJointPerf.html
docs/reference/reportPerf.html
docs/reference/setEdgeTypeAttr.html
docs/reference/sim1.html
docs/reference/simRemMap.html
docs/reference/space.html
docs/reference/spacemap-package.html
docs/reference/spacemap.html
docs/reference/tuneVis.html
docs/reference/xHubEnrich.html
exp/autoTune.R exp/bicSelect.R exp/olsRefit.R exp/simRemMap.R
inst/CITATION
man/adj2igraph.Rd man/adjacency.Rd man/algoFDR.Rd man/algoMCC.Rd man/algoPower.Rd man/bcpls.Rd man/bicCondLike.Rd man/bicLike.Rd man/bootEnsemble.Rd man/bootVote.Rd man/cisTrans.Rd man/cvPerf.Rd man/cvVote.Rd man/initFit.Rd man/modEnrich.Rd man/nonZeroUpper.Rd man/nonZeroWhole.Rd man/rankHub.Rd man/reportHubs.Rd man/reportJointPerf.Rd man/reportPerf.Rd man/sim1.Rd man/space.Rd man/spacemap.Rd man/tuneVis.Rd man/xHubEnrich.Rd preppkg/identify_r_style_issues.R
preppkg/test
preppkg/test2
preppkg/website.R
spacemap.Rproj
src/.calcThetaBlocks.cpp.swp
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/RemMap.cpp
src/RemMap.h
src/Space.cpp
src/Space.h
src/SpaceMap.cpp
src/calcThetaBlocks.cpp
src/conc2parcor.cpp
src/degfree.cpp
src/gaussCondLogLik.cpp
src/gaussLogLik.cpp
src/olsRefitLasso.cpp
tests/ols_refit.R tests/ols_refit_test.R vignettes/basics.Rmd vignettes/ensemble.Rmd vignettes/neta.Rmd vignettes/tuning.Rmd
topherconley/spacemap documentation built on June 23, 2017, 7:51 a.m.