Files in topherconley/spacemap

A novel conditional graphical model for integrative genomics

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/RcppExports.R R/bcpls.R R/bic.R R/cov2ParCor.R R/crossValidation.R R/cvVoteRDS.R R/formatPerformance.R R/initFit.R R/networkAnalysis.R R/remMap.R R/reportPerformance.R R/reprodEdge.R R/sim1.R R/space.R R/spacemap.R R/tuneVis.R README.Rmd README.md

_config.yml

_pkgdown.yml

data-raw/consolidate_bcpls_data.R data-raw/model1_11_20_250.R

data/bcpls.rda

data/sim1.rda

docs/LICENSE

docs/articles/basics.html

docs/articles/basics_files/d3-4.5.0/LICENSE

docs/articles/basics_files/d3-4.5.0/d3.min.js

docs/articles/basics_files/figure-html/unnamed-chunk-9-1.png

docs/articles/basics_files/forceNetwork-binding-0.4/forceNetwork.js

docs/articles/basics_files/htmlwidgets-0.8/htmlwidgets.js

docs/articles/ensemble.html

docs/articles/ensemble_files/figure-html/unnamed-chunk-1-1.png

docs/articles/ensemble_files/figure-html/unnamed-chunk-1-2.png

docs/articles/index.html

docs/articles/neta.html

docs/articles/tune_sim1.html

docs/articles/tuning.html

docs/articles/tuning_files/figure-html/unnamed-chunk-10-1.png

docs/articles/tuning_files/figure-html/unnamed-chunk-12-1.png

docs/articles/tuning_files/figure-html/unnamed-chunk-13-1.png

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docs/articles/tuning_files/figure-html/unnamed-chunk-18-1.png

docs/articles/tuning_files/figure-html/unnamed-chunk-23-1.png

docs/authors.html

docs/contact.html

docs/figures/flow-chart-4.png

docs/index.html

docs/installation.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/reference/adj2igraph.html

docs/reference/adjacency.html

docs/reference/algoFDR.html

docs/reference/algoMCC.html

docs/reference/algoPower.html

docs/reference/bcpls.html

docs/reference/bicCondLike.html

docs/reference/bicLike.html

docs/reference/bootEnsemble.html

docs/reference/bootVote.html

docs/reference/cisTrans.html

docs/reference/cvPerf.html

docs/reference/cvVote.html

docs/reference/index.html

docs/reference/initFit.html

docs/reference/minScoreIndex.html

docs/reference/modAnalysis.html

docs/reference/modEnrich.html

docs/reference/neta.html

docs/reference/nonZeroUpper.html

docs/reference/nonZeroWhole.html

docs/reference/rankHub.html

docs/reference/reportHubs.html

docs/reference/reportJointPerf.html

docs/reference/reportPerf.html

docs/reference/setEdgeTypeAttr.html

docs/reference/sim1.html

docs/reference/simRemMap.html

docs/reference/space.html

docs/reference/spacemap-package.html

docs/reference/spacemap.html

docs/reference/tuneVis.html

docs/reference/xHubEnrich.html

exp/autoTune.R exp/bicSelect.R exp/olsRefit.R exp/simRemMap.R

inst/CITATION

man/adj2igraph.Rd man/adjacency.Rd man/algoFDR.Rd man/algoMCC.Rd man/algoPower.Rd man/bcpls.Rd man/bicCondLike.Rd man/bicLike.Rd man/bootEnsemble.Rd man/bootVote.Rd man/cisTrans.Rd man/cvPerf.Rd man/cvVote.Rd man/initFit.Rd man/modEnrich.Rd man/nonZeroUpper.Rd man/nonZeroWhole.Rd man/rankHub.Rd man/reportHubs.Rd man/reportJointPerf.Rd man/reportPerf.Rd man/sim1.Rd man/space.Rd man/spacemap.Rd man/tuneVis.Rd man/xHubEnrich.Rd preppkg/identify_r_style_issues.R

preppkg/test

preppkg/test2

preppkg/website.R

spacemap.Rproj

src/.calcThetaBlocks.cpp.swp

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/RemMap.cpp

src/RemMap.h

src/Space.cpp

src/Space.h

src/SpaceMap.cpp

src/calcThetaBlocks.cpp

src/conc2parcor.cpp

src/degfree.cpp

src/gaussCondLogLik.cpp

src/gaussLogLik.cpp

src/olsRefitLasso.cpp

tests/ols_refit.R tests/ols_refit_test.R vignettes/basics.Rmd vignettes/ensemble.Rmd vignettes/neta.Rmd vignettes/tuning.Rmd

topherconley/spacemap documentation built on May 31, 2019, 6:36 p.m.