cvPerf: CV.Vote Model Performance

In topherconley/spacemap: A novel conditional graphical model for integrative genomics

Description

Convenience function for evaluating edge detection performance of CV.Vote model fits.

Usage

cvPerf(cvOut, truth, method, givenX = FALSE, Xindex = NULL, Yindex = NULL,
  aszero = 1e-06)

Arguments

cvOut	Output from cvVote.
truth	A list of numeric matrices named 'xy' and 'yy' encoding the true model parameters (or an adjacency matrix).
method	Character vector indicates cvOut came from spaceMap or SPACE model. See parameter method in cvVote.
givenX	Logical (defaults to FALSE). Set to TRUE for method == "space" when cvOut had non-null X input to cvVote.
Xindex	Integer vector of indices of X variables in partial correlation matrix. Defaults to NULL, but must be non-null when method == "space" & givenX = TRUE.
Yindex	Integer vector of indices of Y variables in partial correlation matrix. Defaults to NULL, but must be non-null when method == "space" & givenX = TRUE.
aszero	A numeric value specifying the point at which a parameter estimate should be effectively considered of zero value.

See Also

reportJointPerf, reportPerf

topherconley/spacemap documentation built on May 31, 2019, 6:36 p.m.