reportHubs: Report top hub nodes with attributes.

In topherconley/spacemap: A novel conditional graphical model for integrative genomics

Description

Organize x and y hub analysis into a publish-ready format.

Usage

reportHubs(ig, top = 10, level = c("x", "y"), unit = "Mb",
  unit_base = 1e+06, sig = 2)

Arguments

ig	An igraph network object returned from either rankHub or cisTrans.
top	An integer specifying the number of top-degree hubs to report.
level	Character specifying nodes of level x or y, but not both. Defaults to x.
unit	If gene coordinates for x-hubs exist, then this will label the chosen genome location scale in the table. Defaults to mega-base (Mb).
unit_base	Numeric divisor of the genome coordinates and should correspond to unit label. Defaults to 1e6 for mega-base.
sig	Integer for controlling precision of genome coordinates.

Value

A table of top ranked node hubs with attributes deemed relevant to report. See vignette on network analysis for examples.

See Also

rankHub, cisTrans, adj2igraph, xHubEnrich, modEnrich

topherconley/spacemap documentation built on May 31, 2019, 6:36 p.m.