Description Usage Arguments Value See Also
Organize x and y hub analysis into a publish-ready format.
1 2 | reportHubs(ig, top = 10, level = c("x", "y"), unit = "Mb",
unit_base = 1e+06, sig = 2)
|
ig |
An igraph network object returned from either
|
top |
An integer specifying the number of top-degree hubs to report. |
level |
Character specifying nodes of level x or y, but not both. Defaults to x. |
unit |
If gene coordinates for x-hubs exist, then this will label the chosen genome location scale in the table. Defaults to mega-base (Mb). |
unit_base |
Numeric divisor of the genome coordinates and should
correspond to |
sig |
Integer for controlling precision of genome coordinates. |
A table of top ranked node hubs with attributes deemed relevant to report. See vignette on network analysis for examples.
rankHub
, cisTrans
,
adj2igraph
, xHubEnrich
, modEnrich
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