API for transbioZI/Gimpute
Gimpute: An efficient genetic data processing and imputation pipeline
| Global functions | |
|---|---|
| .convertImpute2ByGtool | Man page Source code |
| .filterImputeData | Man page Source code |
| .filterImputeData2 | Man page Source code |
| .getInfoScoreImpute2 | Man page Source code |
| .imputedByImpute2 | Man page Source code |
| .imputedByImpute4 | Man page Source code |
| .mergePlinkData | Man page Source code |
| .prePhasingByShapeit | Man page Source code |
| .prepareLegend2bim | Man page Source code |
| .snpSharedPos | Man page Source code |
| checkAlign2ref | Man page Source code |
| chrWiseSplit | Man page Source code |
| chunk4eachChr | Man page Source code |
| computeInfoByQctool | Man page Source code |
| extractByGenipe | Man page Source code |
| genoQC | Man page Source code |
| getGroupLabel | Man page Source code |
| imputedByGenipe | Man page Source code |
| mergeByGenipe | Man page Source code |
| phaseImpute | Man page Source code |
| plotPCA4plink | Man page Source code |
| postImpQC | Man page Source code |
| prepareAnnoFile4affy | Man page Source code |
| reductExpand | Man page Source code |
| removeNoGroupId | Man page Source code |
| removeOutlierByPCs | Man page Source code |
| removeSampID | Man page Source code |
| removedDoubleProbes | Man page Source code |
| removedExclProbe | Man page Source code |
| removedInstFhet | Man page Source code |
| removedInstMiss | Man page Source code |
| removedMaleHetX | Man page Source code |
| removedMendelErr | Man page Source code |
| removedMonoSnp | Man page Source code |
| removedParentIdsMiss | Man page Source code |
| removedSnpFemaleChrXhweControl | Man page Source code |
| removedSnpFemaleChrXmiss | Man page Source code |
| removedSnpHWEauto | Man page Source code |
| removedSnpHetX | Man page Source code |
| removedSnpMiss | Man page Source code |
| removedSnpMissDiff | Man page Source code |
| removedSnpMissPostImp | Man page Source code |
| removedUnmapProbes | Man page Source code |
| removedWrongAnceInst | Man page Source code |
| removedYMtSnp | Man page Source code |
| renamePlinkBFile | Man page Source code |
| setHeteroHaploMissing | Man page Source code |
| splitXchr | Man page Source code |
| updateGenoInfo | Man page Source code |
| updateGroupIdAndSex | Man page Source code |
| updatedSnpInfo | Man page Source code |
