call.treeview: Function to call the standalone fTreeView Java application

In uc-bd2k/CLEAN: Clustering Enrichment Analysis

Function to call the standalone fTreeView Java application

Description

This function calls fTreeview, a Java appplication to display the heatmap, gene clustering, sample clustering, and functional annotation files generated with the CLEAN package.

Usage

call.treeview(cdtFile = "cluster.cdt", treeViewPath = .fTreeViewPath, wait = FALSE)

Arguments

cdtFile	A file in cdt format. The .cdt file name extension may be omitted
treeViewPath	Path where the treeview jar file is located
wait	Parameter to the system() function

Author(s)

Johannes Freudenberg

See Also

funcClustAnnot, system, r2cdt

Examples

## not run
# data(gimmOut)
# funcClustAnnot(gimmOut, file = "cluster")
# call.treeview("cluster.cdt")

uc-bd2k/CLEAN documentation built on Sept. 22, 2022, 4:12 a.m.