Files in uc-bd2k/CLEAN
Clustering Enrichment Analysis
.gitignore
DESCRIPTION
NAMESPACE
R/.svn/entries
R/.svn/text-base/CLEAN.R.svn-base
R/.svn/text-base/GRS.R.svn-base
R/.svn/text-base/LRpath.R.svn-base
R/.svn/text-base/RS.R.svn-base
R/.svn/text-base/RandomSet.R.svn-base
R/.svn/text-base/annotateChipSeqPeaks.R.svn-base
R/.svn/text-base/atr2r.R.svn-base
R/.svn/text-base/call.treeview.R.svn-base
R/.svn/text-base/cdt2r.R.svn-base
R/.svn/text-base/chipSeqWeightedSum.R.svn-base
R/.svn/text-base/convertFunctionalCategories.R.svn-base
R/.svn/text-base/convertGeneTable.R.svn-base
R/.svn/text-base/createRefGenome.R.svn-base
R/.svn/text-base/createRefGenome.R~.svn-base
R/.svn/text-base/funcClustAnnot.R.svn-base
R/.svn/text-base/geneListEnrichment.R.svn-base
R/.svn/text-base/geneSigInClustering.R.svn-base
R/.svn/text-base/geneSigInClustering_nullDistr.R.svn-base
R/.svn/text-base/geneSigInList.R.svn-base
R/.svn/text-base/generateTreeViewFiles.R.svn-base
R/.svn/text-base/genesInEnrichedCategories.R.svn-base
R/.svn/text-base/getAllClusters.R.svn-base
R/.svn/text-base/getBinarySubTree.R.svn-base
R/.svn/text-base/getFunctionalCategories.R.svn-base
R/.svn/text-base/gtr2r.R.svn-base
R/.svn/text-base/initializeCategories.R.svn-base
R/.svn/text-base/initializeChipSeq.R.svn-base
R/.svn/text-base/insertCdt.R.svn-base
R/.svn/text-base/nonHierarchicalClustering.R.svn-base
R/.svn/text-base/plotCLEANscore.R.svn-base
R/.svn/text-base/primSetSigInClustering.R.svn-base
R/.svn/text-base/primSetSigInClustering_nullDistr.R.svn-base
R/.svn/text-base/pruneMinFDR.R.svn-base
R/.svn/text-base/qvalue.R.svn-base
R/.svn/text-base/r2atr.R.svn-base
R/.svn/text-base/r2cdt.R.svn-base
R/.svn/text-base/r2fni.R.svn-base
R/.svn/text-base/r2gtr.R.svn-base
R/.svn/text-base/runCLEAN.R.svn-base
R/.svn/text-base/significantCategories.R.svn-base
R/.svn/text-base/zzz.R.svn-base
R/CLEAN.R
R/GRS.R
R/LRpath.R
R/RS.R
R/RandomSet.R
R/annotateChipSeqPeaks.R
R/atr2r.R
R/call.treeview.R
R/call.treeview.R~
R/cdt2r.R
R/chipSeqWeightedSum.R
R/convertFunctionalCategories.R
R/convertGeneTable.R
R/createRefGenome.R
R/createRefGenome.R~
R/enrichmentGSEA.R
R/funcClustAnnot.R
R/geneListEnrichment.R
R/geneSigInClustering.R
R/geneSigInClustering_nullDistr.R
R/geneSigInList.R
R/generateTreeViewFiles.R
R/genesInEnrichedCategories.R
R/getAllClusters.R
R/getBinarySubTree.R
R/getFunctionalCategories.R
R/gtr2r.R
R/initializeCategories.R
R/initializeChipSeq.R
R/insertCdt.R
R/nonHierarchicalClustering.R
R/plotCLEANscore.R
R/primSetSigInClustering.R
R/primSetSigInClustering_nullDistr.R
R/pruneMinFDR.R
R/qvalue.R
R/r2atr.R
R/r2cdt.R
R/r2fni.R
R/r2gtr.R
R/runCLEAN.R
R/significantCategories.R
R/zzz.R
R/zzz.R~
README.md
data/.svn/entries
data/.svn/prop-base/bCa.rda.svn-base
data/.svn/prop-base/cMap.rda.svn-base
data/.svn/prop-base/gimmOut.rda.svn-base
data/.svn/prop-base/nMyc.rda.svn-base
data/.svn/text-base/bCa.rda.svn-base
data/.svn/text-base/cMap.rda.svn-base
data/.svn/text-base/gimmOut.rda.svn-base
data/.svn/text-base/nMyc.rda.svn-base
data/bCa.rda
data/cMap.rda
data/gimmOut.rda
data/nMyc.rda
inst/.svn/entries
inst/doc/.svn/entries
inst/doc/.svn/prop-base/LFTreeView.jar.svn-base
inst/doc/.svn/prop-base/TreeView.jar.svn-base
inst/doc/.svn/text-base/LFTreeView.jar.svn-base
inst/doc/.svn/text-base/TreeView.jar.svn-base
inst/doc/LFTreeView.jar
inst/doc/TreeView.jar
man/.svn/entries
man/.svn/text-base/CLEAN-package.Rd.svn-base
man/.svn/text-base/GRS.Rd.svn-base
man/.svn/text-base/LRpath.Rd.svn-base
man/.svn/text-base/RandomSet.Rd.svn-base
man/.svn/text-base/annotateChipSeqPeaks.Rd.svn-base
man/.svn/text-base/annotateChipSeqPeaks.Rd~.svn-base
man/.svn/text-base/bCa.Rd.svn-base
man/.svn/text-base/cMap.Rd.svn-base
man/.svn/text-base/call.treeview.Rd.svn-base
man/.svn/text-base/cdt2r.Rd.svn-base
man/.svn/text-base/chipSeqWeightedSum.Rd.svn-base
man/.svn/text-base/chipSeqWeightedSum.Rd~.svn-base
man/.svn/text-base/convertFunctionalCategories.Rd.svn-base
man/.svn/text-base/createRefGenome.Rd.svn-base
man/.svn/text-base/createRefGenome.Rd~.svn-base
man/.svn/text-base/geneSigInClustering.Rd.svn-base
man/.svn/text-base/generateTreeViewFiles.Rd.svn-base
man/.svn/text-base/genesInEnrichedCategories.Rd.svn-base
man/.svn/text-base/getBinarySubTree.Rd.svn-base
man/.svn/text-base/getFuntionalCategories.Rd.svn-base
man/.svn/text-base/gimmOut.Rd.svn-base
man/.svn/text-base/nonHierarchicalClustering.Rd.svn-base
man/.svn/text-base/plotCLEANscore.Rd.svn-base
man/.svn/text-base/qvalue.Rd.svn-base
man/.svn/text-base/r2cdt.Rd.svn-base
man/CLEAN-package.Rd
man/CLEAN-package.Rd~
man/GRS.Rd
man/LRpath.Rd
man/RandomSet.Rd
man/annotateChipSeqPeaks.Rd
man/annotateChipSeqPeaks.Rd~
man/bCa.Rd
man/cMap.Rd
man/call.treeview.Rd
man/cdt2r.Rd
man/chipSeqWeightedSum.Rd
man/chipSeqWeightedSum.Rd~
man/convertFunctionalCategories.Rd
man/createRefGenome.Rd
man/createRefGenome.Rd~
man/enrichmentGSEA.Rd
man/geneSigInClustering.Rd
man/generateTreeViewFiles.Rd
man/genesInEnrichedCategories.Rd
man/getBinarySubTree.Rd
man/getFuntionalCategories.Rd
man/gimmOut.Rd
man/nonHierarchicalClustering.Rd
man/plotCLEANscore.Rd
man/qvalue.Rd
man/r2cdt.Rd
