getFuntionalCategories: Retrieve functional categories from species-specific library.

In uc-bd2k/CLEAN: Clustering Enrichment Analysis

Retrieve functional categories from species-specific library.

Description

Load the species-specific library/ies and retrieve the functional catogories of type(s) "functionalCategories".

Usage

getFunctionalCategories(functionalCategories, species)

Arguments

functionalCategories	A character vector of functional catogory types.
species	Species abreviation such as "Hs", "Mm", or "Rn"

Value

A list containing the functional catories and their description (optional).

Author(s)

Johannes Freudenberg

See Also

runCLEAN

Examples

library(CLEAN.Rn)
data(gimmOut)
myFunctionalCategories <- getFunctionalCategories(CLEAN.Rn(), species = "Hs")
generateTreeViewFiles(gimmOut, functionalCategories = myFunctionalCategories)

uc-bd2k/CLEAN documentation built on Oct. 19, 2024, 11:45 p.m.